HL_6T83_149

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUAUGAUG

Length

8 nucleotides

Bulged bases

6T83|1|Aa|U|1348, 6T83|1|Aa|A|1352, 6T83|1|Aa|U|1353, 6T83|1|Aa|G|1354, 6T83|1|Aa|U|1356

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_149 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3535

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6T83|1|Aa|U|1347
6T83|1|Aa|U|1348
6T83|1|Aa|A|1352
6T83|1|Aa|U|1353
6T83|1|Aa|G|1354
6T83|1|Aa|A|1355
6T83|1|Aa|U|1356
6T83|1|Aa|G|1357

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L18-A

Chain Fa

60S ribosomal protein L4-A

Chain Ha

60S ribosomal protein L6-A

Chain P

60S ribosomal protein L32