HL_6T83_234

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

6T83|1|1b|C|1762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_234 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.314

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25967.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6T83|1|1b|C|1759
6T83|1|1b|A|1760
6T83|1|1b|C|1761
6T83|1|1b|C|1762
6T83|1|1b|U|1763
6T83|1|1b|U|1764
6T83|1|1b|U|1765
6T83|1|1b|G|1766

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Ry

60S ribosomal protein L19-A

Chain Uy

60S ribosomal protein L22-A