HL_6T83_243
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6T83_243 not in the Motif Atlas
- Homologous match to HL_8C3A_229
- Geometric discrepancy: 0.1325
- The information below is about HL_8C3A_229
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_61933.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6T83|1|Ca|C|47
6T83|1|Ca|A|48
6T83|1|Ca|G|49
6T83|1|Ca|C|50
6T83|1|Ca|G|51
6T83|1|Ca|A|52
6T83|1|Ca|A|53
6T83|1|Ca|A|54
6T83|1|Ca|U|55
6T83|1|Ca|G|56
Current chains
- Chain Ca
- 5.8S rRNA
Nearby chains
- Chain Aa
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- 60S ribosomal protein L25
- Chain S
- 60S ribosomal protein L35-A
- Chain U
- 60S ribosomal protein L37-A
- Chain W
- 60S ribosomal protein L39
Coloring options: