HL_6TB3_003

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6TB3|1|2|U|158, 6TB3|1|2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.249

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6TB3|1|2|G|154
6TB3|1|2|U|155
6TB3|1|2|A|156
6TB3|1|2|A|157
6TB3|1|2|U|158
6TB3|1|2|U|159
6TB3|1|2|C|160

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A