HL_6TB3_041

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

6TB3|1|BQ|U|133, 6TB3|1|BQ|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_041 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.0683

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6TB3|1|BQ|C|132
6TB3|1|BQ|U|133
6TB3|1|BQ|U|134
6TB3|1|BQ|C|135
6TB3|1|BQ|G|136

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AQ

60S ribosomal protein L15-A

Chain BP

60S ribosomal protein L35-A