HL_6TB3_049

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

6TB3|1|BQ|U|545, 6TB3|1|BQ|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_049 not in the Motif Atlas

Homologous match to HL_5TBW_012

Geometric discrepancy: 0.3077

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6TB3|1|BQ|C|543
6TB3|1|BQ|C|544
6TB3|1|BQ|U|545
6TB3|1|BQ|C|546
6TB3|1|BQ|G|547
6TB3|1|BQ|G|548

Current chains

Chain BQ

25S rRNA

Nearby chains