HL_6TB3_051

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6TB3|1|BQ|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_051 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0646

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6TB3|1|BQ|U|640
6TB3|1|BQ|C|641
6TB3|1|BQ|U|642
6TB3|1|BQ|U|643
6TB3|1|BQ|G|644
6TB3|1|BQ|A|645
6TB3|1|BQ|A|646
6TB3|1|BQ|A|647
6TB3|1|BQ|C|648
6TB3|1|BQ|A|649

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L28

Chain BA

60S ribosomal protein L3

Chain BG

60S ribosomal protein L32