HL_6TB3_059

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6TB3|1|BQ|C|959, 6TB3|1|BQ|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_059 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.061

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6TB3|1|BQ|C|958
6TB3|1|BQ|C|959
6TB3|1|BQ|U|960
6TB3|1|BQ|C|961
6TB3|1|BQ|A|962
6TB3|1|BQ|G|963

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L42-A

Chain AR

60S ribosomal protein L28

Chain AV

60S ribosomal protein L29