HL_6TB3_069

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6TB3|1|BQ|G|1507, 6TB3|1|BQ|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_069 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.0838

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6TB3|1|BQ|A|1506
6TB3|1|BQ|G|1507
6TB3|1|BQ|C|1508
6TB3|1|BQ|A|1509
6TB3|1|BQ|G|1510
6TB3|1|BQ|U|1511
6TB3|1|BQ|U|1512

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L39

Chain AX

60S ribosomal protein L17-A

Chain BF

60S ribosomal protein L19-A