HL_6TB3_080

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6TB3|1|BQ|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_080 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.0955

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

6TB3|1|BQ|C|1923
6TB3|1|BQ|U|1924
6TB3|1|BQ|U|1925
6TB3|1|BQ|C|1926
6TB3|1|BQ|G|1927
6TB3|1|BQ|G|1928

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AS

60S ribosomal protein L41-B

Chain AT

60S ribosomal protein L43-A