HL_6TB3_082

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

6TB3|1|BQ|G|2111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_082 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.0939

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6TB3|1|BQ|G|2110
6TB3|1|BQ|G|2111
6TB3|1|BQ|U|2112
6TB3|1|BQ|A|2113
6TB3|1|BQ|C|2114

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AE

60S ribosomal protein L24-A

Chain BF

60S ribosomal protein L19-A