HL_6TB3_107

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

6TB3|1|BQ|A|3243, 6TB3|1|BQ|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_107 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.0942

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6TB3|1|BQ|C|3240
6TB3|1|BQ|G|3241
6TB3|1|BQ|G|3242
6TB3|1|BQ|A|3243
6TB3|1|BQ|A|3244
6TB3|1|BQ|A|3245
6TB3|1|BQ|G|3246
6TB3|1|BQ|G|3247

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3