HL_6TB3_115
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAG(H2U)GGAAG
- Length
- 9 nucleotides
- Bulged bases
- 6TB3|1|n|G|19
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TB3_115 not in the Motif Atlas
- Homologous match to HL_1YFG_001
- Geometric discrepancy: 0.236
- The information below is about HL_1YFG_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6TB3|1|n|C|13
6TB3|1|n|A|14
6TB3|1|n|G|15
6TB3|1|n|H2U|16
6TB3|1|n|G|18
6TB3|1|n|G|19
6TB3|1|n|A|20
6TB3|1|n|A|21
6TB3|1|n|G|22
Current chains
- Chain n
- tRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L11-B
- Chain AP
- 60S ribosomal protein L42-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain BW
- General negative regulator of transcription subunit 5
Coloring options: