HL_6TB3_120

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUCCCGUCCGAUCA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_120 not in the Motif Atlas

Homologous match to HL_8C3A_228

Geometric discrepancy: 0.0698

The information below is about HL_8C3A_228

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50688.1

Basepair signature

cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F

Number of instances in this motif group

2

Unit IDs

6TB3|1|BR|U|32
6TB3|1|BR|U|33
6TB3|1|BR|C|34
6TB3|1|BR|C|35
6TB3|1|BR|C|36
6TB3|1|BR|G|37
6TB3|1|BR|U|38
6TB3|1|BR|C|39
6TB3|1|BR|C|40
6TB3|1|BR|G|41
6TB3|1|BR|A|42
6TB3|1|BR|U|43
6TB3|1|BR|C|44
6TB3|1|BR|A|45

Current chains

Chain BR

5S rRNA

Nearby chains

Chain AG

60S ribosomal protein L11-B

Chain BI

60S ribosomal protein L5

Chain BQ

Large subunit ribosomal RNA; LSU rRNA