HL_6TBV_006

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_006 not in the Motif Atlas

Homologous match to HL_5J7L_004

Geometric discrepancy: 0.1679

The information below is about HL_5J7L_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6TBV|1|16S1|C|186
6TBV|1|16S1|G|187
6TBV|1|16S1|C|188
6TBV|1|16S1|A|189
6TBV|1|16S1|A|190
6TBV|1|16S1|G|191

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S201

30S ribosomal protein S20