HL_6TBV_008

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

6TBV|1|16S1|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_008 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0571

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6TBV|1|16S1|G|259
6TBV|1|16S1|G|260
6TBV|1|16S1|U|261
6TBV|1|16S1|A|262
6TBV|1|16S1|A|263
6TBV|1|16S1|C|264
6TBV|1|16S1|G|265
6TBV|1|16S1|G|266
6TBV|1|16S1|C|267

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S171

30S ribosomal protein S17

Chain S201

30S ribosomal protein S20