HL_6TBV_009

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_009 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.0599

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6TBV|1|16S1|U|296
6TBV|1|16S1|G|297
6TBV|1|16S1|A|298
6TBV|1|16S1|G|299
6TBV|1|16S1|A|300
6TBV|1|16S1|G|301

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S041

30S ribosomal protein S4

Chain S051

30S ribosomal protein S5

Chain S171

30S ribosomal protein S17