HL_6TBV_010

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_010 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0776

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6TBV|1|16S1|A|320
6TBV|1|16S1|A|321
6TBV|1|16S1|C|322
6TBV|1|16S1|U|323
6TBV|1|16S1|G|324
6TBV|1|16S1|A|325
6TBV|1|16S1|G|326
6TBV|1|16S1|A|327
6TBV|1|16S1|C|328
6TBV|1|16S1|A|329
6TBV|1|16S1|C|330
6TBV|1|16S1|G|331
6TBV|1|16S1|G|332
6TBV|1|16S1|U|333

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S161

30S ribosomal protein S16

Chain S201

30S ribosomal protein S20