HL_6TBV_018

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_018 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.075

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6TBV|1|16S1|C|726
6TBV|1|16S1|G|727
6TBV|1|16S1|A|728
6TBV|1|16S1|A|729
6TBV|1|16S1|G|730
6TBV|1|16S1|G|731

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S151

30S ribosomal protein S15

Chain S211

30S ribosomal protein S21