HL_6TBV_020

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

6TBV|1|16S1|C|841, 6TBV|1|16S1|U|842, 6TBV|1|16S1|U|843, 6TBV|1|16S1|G|844, 6TBV|1|16S1|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_020 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1971

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6TBV|1|16S1|C|840
6TBV|1|16S1|C|841
6TBV|1|16S1|U|842
6TBV|1|16S1|U|843
6TBV|1|16S1|G|844
6TBV|1|16S1|A|845
6TBV|1|16S1|G|846

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S181

30S ribosomal protein S18