HL_6TBV_023
3D structure
- PDB id
- 6TBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAU(2MG)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 6TBV|1|16S1|A|968, 6TBV|1|16S1|G|971
- QA status
- Modified nucleotides: 2MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TBV_023 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.0866
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6TBV|1|16S1|G|963
6TBV|1|16S1|A|964
6TBV|1|16S1|U|965
6TBV|1|16S1|2MG|966
6TBV|1|16S1|5MC|967
6TBV|1|16S1|A|968
6TBV|1|16S1|A|969
6TBV|1|16S1|C|970
6TBV|1|16S1|G|971
6TBV|1|16S1|C|972
Current chains
- Chain 16S1
- 16S rRNA
Nearby chains
- Chain PTR1
- Transfer RNA; tRNA
- Chain S091
- 30S ribosomal protein S9
- Chain S101
- 30S ribosomal protein S10
- Chain S131
- 30S ribosomal protein S13
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