3D structure

PDB id
6TBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GAUCAGAAUGC
Length
11 nucleotides
Bulged bases
6TBV|1|16S1|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6TBV_032 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.0765
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_86432.1
Basepair signature
cWW-tWH-tWH-F-F-F
Number of instances in this motif group
5

Unit IDs

6TBV|1|16S1|G|1356
6TBV|1|16S1|A|1357
6TBV|1|16S1|U|1358
6TBV|1|16S1|C|1359
6TBV|1|16S1|A|1360
6TBV|1|16S1|G|1361
6TBV|1|16S1|A|1362
6TBV|1|16S1|A|1363
6TBV|1|16S1|U|1364
6TBV|1|16S1|G|1365
6TBV|1|16S1|C|1366

Current chains

Chain 16S1
16S rRNA

Nearby chains

Chain S031
30S ribosomal protein S3
Chain S091
30S ribosomal protein S9
Chain S101
30S ribosomal protein S10
Chain S141
30S ribosomal protein S14

Coloring options:


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