HL_6TBV_050

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

6TBV|1|23S1|A|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_050 not in the Motif Atlas

Geometric match to HL_8HNT_002

Geometric discrepancy: 0.3538

The information below is about HL_8HNT_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56676.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6TBV|1|23S1|C|544
6TBV|1|23S1|U|545
6TBV|1|23S1|U|546
6TBV|1|23S1|A|547
6TBV|1|23S1|G|548
6TBV|1|23S1|G|549

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L131

50S ribosomal protein L13