HL_6TBV_063

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_063 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.2578

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6TBV|1|23S1|C|1092
6TBV|1|23S1|G|1093
6TBV|1|23S1|U|1094
6TBV|1|23S1|A|1095
6TBV|1|23S1|A|1096
6TBV|1|23S1|U|1097
6TBV|1|23S1|A|1098
6TBV|1|23S1|G|1099

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L361

50S ribosomal protein L36