HL_6TBV_070

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6TBV|1|23S1|A|1453, 6TBV|1|23S1|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_070 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.0933

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6TBV|1|23S1|C|1451
6TBV|1|23S1|G|1452
6TBV|1|23S1|A|1453
6TBV|1|23S1|C|1454
6TBV|1|23S1|G|1455
6TBV|1|23S1|G|1456
6TBV|1|23S1|U|1457
6TBV|1|23S1|U|1458
6TBV|1|23S1|G|1459

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L171

50S ribosomal protein L17