HL_6TBV_079
3D structure
- PDB id
- 6TBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6TBV|1|23S1|A|1780, 6TBV|1|23S1|U|1781, 6TBV|1|23S1|U|1782, 6TBV|1|23S1|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TBV_079 not in the Motif Atlas
- Homologous match to HL_5J7L_178
- Geometric discrepancy: 0.089
- The information below is about HL_5J7L_178
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
6TBV|1|23S1|U|1777
6TBV|1|23S1|U|1778
6TBV|1|23S1|U|1779
6TBV|1|23S1|A|1780
6TBV|1|23S1|U|1781
6TBV|1|23S1|U|1782
6TBV|1|23S1|A|1783
6TBV|1|23S1|A|1784
6TBV|1|23S1|A|1785
6TBV|1|23S1|A|1786
6TBV|1|23S1|A|1787
Current chains
- Chain 23S1
- 23S rRNA
Nearby chains
- Chain L021
- 50S ribosomal protein L2
- Chain L341
- 50S ribosomal protein L34
- Chain SPE1
- SpeFL
Coloring options: