HL_6TBV_082

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

6TBV|1|23S1|A|1913, 6TBV|1|23S1|C|1914, 6TBV|1|23S1|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_082 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.078

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6TBV|1|23S1|G|1910
6TBV|1|23S1|PSU|1911
6TBV|1|23S1|A|1912
6TBV|1|23S1|A|1913
6TBV|1|23S1|C|1914
6TBV|1|23S1|3TD|1915
6TBV|1|23S1|A|1916
6TBV|1|23S1|PSU|1917
6TBV|1|23S1|A|1918
6TBV|1|23S1|A|1919
6TBV|1|23S1|C|1920

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain 16S1

Small subunit ribosomal RNA; SSU rRNA

Chain PTR1

Transfer RNA; tRNA