HL_6TBV_083

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6TBV|1|23S1|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_083 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0633

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6TBV|1|23S1|G|1949
6TBV|1|23S1|G|1950
6TBV|1|23S1|U|1951
6TBV|1|23S1|A|1952
6TBV|1|23S1|A|1953
6TBV|1|23S1|G|1954
6TBV|1|23S1|U|1955
6TBV|1|23S1|U|1956
6TBV|1|23S1|C|1957

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain 16S1

Small subunit ribosomal RNA; SSU rRNA

Chain L141

50S ribosomal protein L14