HL_6TBV_088

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6TBV|1|23S1|A|2268, 6TBV|1|23S1|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_088 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0632

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6TBV|1|23S1|C|2264
6TBV|1|23S1|U|2265
6TBV|1|23S1|A|2266
6TBV|1|23S1|A|2267
6TBV|1|23S1|A|2268
6TBV|1|23S1|G|2269
6TBV|1|23S1|A|2270
6TBV|1|23S1|G|2271
6TBV|1|23S1|U|2272
6TBV|1|23S1|A|2273
6TBV|1|23S1|A|2274
6TBV|1|23S1|C|2275
6TBV|1|23S1|G|2276

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L161

50S ribosomal protein L16

Chain L271

50S ribosomal protein L27