HL_6TBV_100

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6TBV|1|23S1|G|2751, 6TBV|1|23S1|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_100 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0706

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6TBV|1|23S1|C|2745
6TBV|1|23S1|U|2746
6TBV|1|23S1|G|2747
6TBV|1|23S1|A|2748
6TBV|1|23S1|A|2749
6TBV|1|23S1|A|2750
6TBV|1|23S1|G|2751
6TBV|1|23S1|C|2752
6TBV|1|23S1|A|2753
6TBV|1|23S1|U|2754
6TBV|1|23S1|C|2755
6TBV|1|23S1|U|2756
6TBV|1|23S1|A|2757
6TBV|1|23S1|A|2758
6TBV|1|23S1|G|2759

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L061

50S ribosomal protein L6

Chain L131

50S ribosomal protein L13

Chain L361

50S ribosomal protein L36