HL_6TBV_109

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

6TBV|1|23S1|U|958, 6TBV|1|23S1|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_109 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.0645

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6TBV|1|23S1|PSU|955
6TBV|1|23S1|G|956
6TBV|1|23S1|C|957
6TBV|1|23S1|U|958
6TBV|1|23S1|A|959
6TBV|1|23S1|A|960
6TBV|1|23S1|C|961
6TBV|1|23S1|G|962

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain 05S1

5S ribosomal RNA; 5S rRNA

Chain L161

50S ribosomal protein L16