HL_6TC3_014

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_014 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3774

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6TC3|1|16S1|G|462
6TC3|1|16S1|U|463
6TC3|1|16S1|U|464
6TC3|1|16S1|A|465
6TC3|1|16S1|A|466
6TC3|1|16S1|U|467
6TC3|1|16S1|A|468
6TC3|1|16S1|C|469
6TC3|1|16S1|C|470

Current chains

Chain 16S1

16S rRNA

Nearby chains