6TC3 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6TC3_107 | 1/05S1/34:48 | No text annotation | homologous HL_5J7L_215 NA | |
| HL_6TC3_001 | 1/05S1/38:44 | No text annotation | geometric HL_5J7L_203 NA | |
| HL_6TC3_002 | 1/05S1/86:90 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_6TC3_003 | 1/16S1/12:22 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_6TC3_004 | 1/16S1/83:86 | No text annotation | ||
| HL_6TC3_005 | 1/16S1/158:163 | GNRA | homologous HL_5J7L_003 NA | |
| HL_6TC3_006 | 1/16S1/186:191 | GNRA | homologous HL_5J7L_004 NA | |
| HL_6TC3_007 | 1/16S1/207:212 | UNCG | homologous HL_5J7L_005 NA | |
| HL_6TC3_008 | 1/16S1/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_6TC3_009 | 1/16S1/296:301 | GNRA | homologous HL_5J7L_007 NA | |
| HL_6TC3_010 | 1/16S1/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_6TC3_011 | 1/16S1/342:347 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_6TC3_012 | 1/16S1/379:384 | GNRA | homologous HL_5J7L_010 NA | |
| HL_6TC3_013 | 1/16S1/419:424 | UNCG | homologous HL_4LFB_011 HL_61337.1 | |
| HL_6TC3_014 | 1/16S1/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 NA | |
| HL_6TC3_108 | 1/16S1/522:527 | GNRA variation | homologous HL_4LFB_033 HL_34789.1 | |
| HL_6TC3_016 | 1/16S1/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_6TC3_017 | 1/16S1/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_6TC3_018 | 1/16S1/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_6TC3_019 | 1/16S1/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_6TC3_020 | 1/16S1/840:846 | No text annotation | geometric HL_2Y8W_001 NA | |
| HL_6TC3_021 | 1/16S1/862:867 | GNRA | homologous HL_5J7L_019 NA | |
| HL_6TC3_022 | 1/16S1/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_6TC3_023 | 1/16S1/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_6TC3_024 | 1/16S1/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_6TC3_025 | 1/16S1/1028:1033 | UNCG | geometric HL_5J7L_171 NA | |
| HL_6TC3_026 | 1/16S1/1076:1081 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_6TC3_027 | 1/16S1/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_6TC3_028 | 1/16S1/1134:1140 | No text annotation | homologous HL_5J7L_025 NA | |
| HL_6TC3_029 | 1/16S1/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.1 | |
| HL_6TC3_030 | 1/16S1/1265:1270 | GNRA | homologous HL_5J7L_027 NA | |
| HL_6TC3_031 | 1/16S1/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 NA | |
| HL_6TC3_032 | 1/16S1/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_6TC3_033 | 1/16S1/1449:1454 | UNCG | homologous HL_4LFB_031 HL_61337.1 | |
| HL_6TC3_034 | 1/16S1/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_6TC3_035 | 1/23S1/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_6TC3_036 | 1/23S1/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_6TC3_037 | 1/23S1/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_6TC3_038 | 1/23S1/137:142 | UNCG | geometric HL_6QN3_001 NA | |
| HL_6TC3_039 | 1/23S1/158:168 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_6TC3_040 | 1/23S1/194:201 | No text annotation | geometric HL_4WF9_006 HL_48677.1 | |
| HL_6TC3_041 | 1/23S1/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_6TC3_042 | 1/23S1/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_6TC3_043 | 1/23S1/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_6TC3_044 | 1/23S1/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_6TC3_045 | 1/23S1/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_6TC3_046 | 1/23S1/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_6TC3_047 | 1/23S1/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_6TC3_048 | 1/23S1/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_6TC3_049 | 1/23S1/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_6TC3_050 | 1/23S1/544:549 | No text annotation | geometric HL_8HNT_002 HL_56676.1 | |
| HL_6TC3_051 | 1/23S1/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 NA | |
| HL_6TC3_052 | 1/23S1/611:617 | No text annotation | homologous HL_5J7L_151 NA | |
| HL_6TC3_053 | 1/23S1/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_6TC3_054 | 1/23S1/641:647 | No text annotation | homologous HL_5J7L_153 NA | |
| HL_6TC3_055 | 1/23S1/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_6TC3_056 | 1/23S1/744:753 | No text annotation | homologous HL_5J7L_155 NA | |
| HL_6TC3_057 | 1/23S1/779:785 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_6TC3_058 | 1/23S1/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_6TC3_059 | 1/23S1/882:894 | No text annotation | ||
| HL_6TC3_109 | 1/23S1/955:962 | GNRA | homologous HL_5J7L_211 NA | |
| HL_6TC3_061 | 1/23S1/978:985 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_6TC3_062 | 1/23S1/1064:1074 | No text annotation | homologous HL_5J7L_161 NA | |
| HL_6TC3_063 | 1/23S1/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.1 | |
| HL_6TC3_064 | 1/23S1/1171:1178 | No text annotation | homologous HL_5J7L_163 NA | |
| HL_6TC3_065 | 1/23S1/1222:1227 | GNRA | homologous HL_5J7L_164 NA | |
| HL_6TC3_066 | 1/23S1/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_6TC3_067 | 1/23S1/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_6TC3_068 | 1/23S1/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_6TC3_069 | 1/23S1/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_6TC3_070 | 1/23S1/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 NA | |
| HL_6TC3_071 | 1/23S1/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_6TC3_072 | 1/23S1/1533:1538 | UNCG | homologous HL_5J7L_171 NA | |
| HL_6TC3_073 | 1/23S1/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_6TC3_074 | 1/23S1/1612:1619 | No text annotation | homologous HL_5J7L_173 NA | |
| HL_6TC3_075 | 1/23S1/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_6TC3_076 | 1/23S1/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_6TC3_077 | 1/23S1/1728:1731 | No text annotation | homologous HL_5J7L_176 NA | |
| HL_6TC3_078 | 1/23S1/1752:1756 | No text annotation | homologous HL_5J7L_177 NA | |
| HL_6TC3_079 | 1/23S1/1777:1787 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_6TC3_080 | 1/23S1/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_6TC3_081 | 1/23S1/1868:1873 | GNRA | geometric HL_2OIU_001 HL_34789.1 | |
| HL_6TC3_082 | 1/23S1/1910:1920 | No text annotation | homologous HL_5J7L_181 NA | |
| HL_6TC3_083 | 1/23S1/1949:1957 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_6TC3_084 | 1/23S1/2027:2036 | No text annotation | homologous HL_5J7L_183 NA | |
| HL_6TC3_085 | 1/23S1/2143:2148 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_6TC3_086 | 1/23S1/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_6TC3_087 | 1/23S1/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_6TC3_088 | 1/23S1/2264:2276 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_6TC3_110 | 1/23S1/2304:2312 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_6TC3_090 | 1/23S1/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_6TC3_091 | 1/23S1/2356:2361 | GNRA | homologous HL_5J7L_190 NA | |
| HL_6TC3_092 | 1/23S1/2374:2379 | GNRA | homologous HL_5J7L_191 NA | |
| HL_6TC3_093 | 1/23S1/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_6TC3_094 | 1/23S1/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_6TC3_095 | 1/23S1/2528:2535 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_6TC3_096 | 1/23S1/2551:2557 | No text annotation | homologous HL_5J7L_195 NA | |
| HL_6TC3_097 | 1/23S1/2594:2599 | GNRA | homologous HL_5J7L_196 NA | |
| HL_6TC3_098 | 1/23S1/2658:2663 | GNRA | homologous HL_5J7L_197 NA | |
| HL_6TC3_099 | 1/23S1/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_6TC3_100 | 1/23S1/2745:2759 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_6TC3_101 | 1/23S1/2796:2799 | No text annotation | geometric HL_6U8D_003 HL_32346.5 | |
| HL_6TC3_102 | 1/23S1/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_6TC3_103 | 1/23S1/2856:2861 | GNRA | homologous HL_5J7L_202 NA | |
| HL_6TC3_104 | 1/PTR1/13:22 | tRNA D-loop | homologous HL_1QF6_001 NA | |
| HL_6TC3_105 | 1/PTR1/31:39 | tRNA anticodon loop | homologous HL_9DFC_104 NA | |
| HL_6TC3_106 | 1/PTR1/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_33597.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6TC3_015 | tRNA D-loop | ||
| HL_6TC3_060 | No text annotation | ||
| HL_6TC3_089 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6TC3_001 | 1/05S1/17:18, 1/05S1/65:67 | Major groove intercalation | homologous IL_5J7L_355 NA | |
| IL_6TC3_002 | 1/05S1/23:28, 1/05S1/56:60 | No text annotation | homologous IL_5J7L_356 NA | |
| IL_6TC3_003 | 1/05S1/30:31, 1/05S1/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_6TC3_004 | 1/05S1/34:38, 1/05S1/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 NA | |
| IL_6TC3_005 | 1/05S1/71:79, 1/05S1/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA | |
| IL_6TC3_006 | 1/16S1/30:32, 1/16S1/552:553 | Single bulged G | homologous IL_4LFB_001 IL_28408.1 | |
| IL_6TC3_007 | 1/16S1/44:45, 1/16S1/396:398 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_6TC3_008 | 1/16S1/47:52, 1/16S1/359:361 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_6TC3_009 | 1/16S1/54:56, 1/16S1/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_6TC3_010 | 1/16S1/63:66, 1/16S1/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.1 | |
| IL_6TC3_011 | 1/16S1/67:69, 1/16S1/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_6TC3_012 | 1/16S1/70:73, 1/16S1/97:98 | Minor groove platform | homologous IL_5J7L_007 NA | |
| IL_6TC3_013 | 1/16S1/75:76, 1/16S1/93:95 | Major groove intercalation | geometric IL_5J7L_352 NA | |
| IL_6TC3_014 | 1/16S1/128:131, 1/16S1/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_6TC3_015 | 1/16S1/132:136, 1/16S1/227:230 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_6TC3_016 | 1/16S1/144:146, 1/16S1/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 NA | |
| IL_6TC3_017 | 1/16S1/147:153, 1/16S1/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_6TC3_018 | 1/16S1/203:206, 1/16S1/213:214 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_6TC3_019 | 1/16S1/242:247, 1/16S1/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_6TC3_020 | 1/16S1/249:252, 1/16S1/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_6TC3_021 | 1/16S1/292:293, 1/16S1/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_6TC3_022 | 1/16S1/367:369, 1/16S1/392:393 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_6TC3_023 | 1/16S1/371:375, 1/16S1/389:390 | C-loop | homologous IL_5J7L_018 NA | |
| IL_6TC3_024 | 1/16S1/375:376, 1/16S1/387:389 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_6TC3_025 | 1/16S1/409:416, 1/16S1/427:433 | No text annotation | homologous IL_5J7L_020 NA | |
| IL_6TC3_026 | 1/16S1/440:442, 1/16S1/492:497 | No text annotation | homologous IL_5J7L_021 NA | |
| IL_6TC3_027 | 1/16S1/446:450, 1/16S1/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 NA | |
| IL_6TC3_028 | 1/16S1/450:454, 1/16S1/477:483 | No text annotation | ||
| IL_6TC3_029 | 1/16S1/455:457, 1/16S1/475:476 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6TC3_030 | 1/16S1/504:511, 1/16S1/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_6TC3_031 | 1/16S1/515:521, 1/16S1/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_52042.1 | |
| IL_6TC3_032 | 1/16S1/569:575, 1/16S1/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_6TC3_033 | 1/16S1/580:584, 1/16S1/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_6TC3_034 | 1/16S1/594:596, 1/16S1/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_6TC3_035 | 1/16S1/597:598, 1/16S1/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_6TC3_036 | 1/16S1/605:612, 1/16S1/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_6TC3_037 | 1/16S1/654:655, 1/16S1/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_74641.1 | |
| IL_6TC3_038 | 1/16S1/658:659, 1/16S1/746:748 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_6TC3_039 | 1/16S1/662:666, 1/16S1/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_6TC3_186 | 1/16S1/673:677, 1/16S1/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_6TC3_041 | 1/16S1/684:688, 1/16S1/699:706 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_6TC3_042 | 1/16S1/774:778, 1/16S1/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_6TC3_043 | 1/16S1/779:783, 1/16S1/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_6TC3_044 | 1/16S1/887:894, 1/16S1/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_6TC3_045 | 1/16S1/922:923, 1/16S1/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_14190.1 | |
| IL_6TC3_046 | 1/16S1/925:927, 1/16S1/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_6TC3_047 | 1/16S1/933:935, 1/16S1/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_61370.1 | |
| IL_6TC3_048 | 1/16S1/953:954, 1/16S1/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_34520.1 | |
| IL_6TC3_049 | 1/16S1/993:997, 1/16S1/1044:1045 | Minor groove platform | homologous IL_5J7L_043 NA | |
| IL_6TC3_050 | 1/16S1/998:999, 1/16S1/1041:1043 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_6TC3_051 | 1/16S1/1048:1050, 1/16S1/1208:1209 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_6TC3_053 | 1/16S1/1052:1056, 1/16S1/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_6TC3_054 | 1/16S1/1057:1058, 1/16S1/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_6TC3_055 | 1/16S1/1060:1061, 1/16S1/1195:1197 | Single bulged A | homologous IL_5J7L_049 NA | |
| IL_6TC3_056 | 1/16S1/1061:1063, 1/16S1/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_6TC3_057 | 1/16S1/1124:1128, 1/16S1/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_6TC3_058 | 1/16S1/1129:1132, 1/16S1/1142:1143 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_6TC3_059 | 1/16S1/1158:1161, 1/16S1/1175:1181 | No text annotation | homologous IL_5J7L_053 NA | |
| IL_6TC3_060 | 1/16S1/1247:1253, 1/16S1/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_6TC3_061 | 1/16S1/1255:1258, 1/16S1/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_6TC3_062 | 1/16S1/1259:1263, 1/16S1/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_6TC3_063 | 1/16S1/1303:1308, 1/16S1/1329:1334 | No text annotation | homologous IL_5J7L_057 NA | |
| IL_6TC3_064 | 1/16S1/1399:1401, 1/16S1/1501:1504 | No text annotation | geometric IL_5J7L_058 NA | |
| IL_6TC3_065 | 1/16S1/1401:1404, 1/16S1/1497:1501 | No text annotation | homologous IL_5J7L_059 NA | |
| IL_6TC3_187 | 1/16S1/1405:1407, 1/16S1/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 NA | |
| IL_6TC3_188 | 1/16S1/1407:1409, 1/16S1/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_29925.1 | |
| IL_6TC3_067 | 1/16S1/1412:1414, 1/16S1/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_6TC3_068 | 1/16S1/1416:1419, 1/16S1/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_6TC3_069 | 1/16S1/1430:1435, 1/16S1/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_6TC3_070 | 1/16S1/1440:1442, 1/16S1/1460:1461 | Single bulged A | homologous IL_5J7L_064 NA | |
| IL_6TC3_071 | 1/16S1/1445:1448, 1/16S1/1455:1457 | No text annotation | homologous IL_5J7L_065 NA | |
| IL_6TC3_072 | 1/23S1/24:30, 1/23S1/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 NA | |
| IL_6TC3_073 | 1/23S1/36:37, 1/23S1/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6TC3_074 | 1/23S1/43:44, 1/23S1/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_6TC3_075 | 1/23S1/81:85, 1/23S1/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
| IL_6TC3_076 | 1/23S1/183:184, 1/23S1/212:214 | Single stack bend | homologous IL_5J7L_249 NA | |
| IL_6TC3_077 | 1/23S1/188:194, 1/23S1/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 NA | |
| IL_6TC3_078 | 1/23S1/239:245, 1/23S1/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_6TC3_079 | 1/23S1/269:271, 1/23S1/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
| IL_6TC3_080 | 1/23S1/274:281, 1/23S1/359:363 | No text annotation | homologous IL_5J7L_253 NA | |
| IL_6TC3_081 | 1/23S1/293:295, 1/23S1/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_6TC3_082 | 1/23S1/481:484, 1/23S1/496:509 | No text annotation | geometric IL_5J7L_255 NA | |
| IL_6TC3_083 | 1/23S1/536:539, 1/23S1/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_6TC3_084 | 1/23S1/564:566, 1/23S1/575:577 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 NA | |
| IL_6TC3_085 | 1/23S1/606:610, 1/23S1/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_6TC3_086 | 1/23S1/672:674, 1/23S1/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_6TC3_087 | 1/23S1/674:678, 1/23S1/799:806 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 NA | |
| IL_6TC3_088 | 1/23S1/697:698, 1/23S1/763:765 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_6TC3_089 | 1/23S1/702:703, 1/23S1/728:730 | Single bulged G | homologous IL_5J7L_262 NA | |
| IL_6TC3_090 | 1/23S1/703:707, 1/23S1/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_6TC3_091 | 1/23S1/738:740, 1/23S1/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_6TC3_092 | 1/23S1/775:777, 1/23S1/787:791 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_6TC3_093 | 1/23S1/844:847, 1/23S1/933:934 | 90 degree turn | geometric IL_5J7L_267 NA | |
| IL_6TC3_189 | 1/23S1/844:848, 1/23S1/930:934 | No text annotation | geometric IL_5J7L_399 NA | |
| IL_6TC3_094 | 1/23S1/847:848, 1/23S1/930:933 | Stack outside cWW | homologous IL_5J7L_268 NA | |
| IL_6TC3_095 | 1/23S1/850:851, 1/23S1/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_6TC3_096 | 1/23S1/856:862, 1/23S1/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_6TC3_097 | 1/23S1/862:863, 1/23S1/913:915 | Single bulged G | geometric IL_5J7L_271 NA | |
| IL_6TC3_098 | 1/23S1/864:868, 1/23S1/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 NA | |
| IL_6TC3_099 | 1/23S1/870:872, 1/23S1/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_6TC3_100 | 1/23S1/875:879, 1/23S1/898:902 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_6TC3_101 | 1/23S1/880:881, 1/23S1/895:897 | Major groove intercalation | geometric IL_4WF9_071 IL_78536.1 | |
| IL_6TC3_102 | 1/23S1/994:996, 1/23S1/1159:1160 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_6TC3_103 | 1/23S1/998:1002, 1/23S1/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_6TC3_104 | 1/23S1/1004:1011, 1/23S1/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_6TC3_105 | 1/23S1/1011:1013, 1/23S1/1149:1150 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_6TC3_106 | 1/23S1/1018:1024, 1/23S1/1140:1144 | Kink-turn related | homologous IL_5J7L_280 NA | |
| IL_6TC3_107 | 1/23S1/1024:1030, 1/23S1/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_6TC3_108 | 1/23S1/1031:1034, 1/23S1/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_6TC3_109 | 1/23S1/1038:1041, 1/23S1/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 NA | |
| IL_6TC3_110 | 1/23S1/1043:1051, 1/23S1/1108:1112 | Kink-turn | homologous IL_5J7L_284 NA | |
| IL_6TC3_111 | 1/23S1/1059:1062, 1/23S1/1076:1079 | No text annotation | homologous IL_5J7L_285 NA | |
| IL_6TC3_112 | 1/23S1/1087:1091, 1/23S1/1100:1102 | No text annotation | homologous IL_9DFE_043 NA | |
| IL_6TC3_113 | 1/23S1/1196:1198, 1/23S1/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 NA | |
| IL_6TC3_114 | 1/23S1/1202:1206, 1/23S1/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_6TC3_115 | 1/23S1/1208:1215, 1/23S1/1234:1238 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_6TC3_116 | 1/23S1/1262:1269, 1/23S1/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_6TC3_117 | 1/23S1/1310:1313, 1/23S1/1603:1604 | Major groove platform; stack outside cWW | homologous IL_5J7L_290 NA | |
| IL_6TC3_118 | 1/23S1/1319:1323, 1/23S1/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_6TC3_119 | 1/23S1/1351:1355, 1/23S1/1376:1380 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_6TC3_120 | 1/23S1/1357:1361, 1/23S1/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_6TC3_121 | 1/23S1/1415:1416, 1/23S1/1582:1587 | No text annotation | homologous IL_5J7L_294 NA | |
| IL_6TC3_122 | 1/23S1/1417:1421, 1/23S1/1577:1581 | UAA/GAN | homologous IL_5J7L_295 NA | |
| IL_6TC3_123 | 1/23S1/1432:1435, 1/23S1/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_6TC3_124 | 1/23S1/1437:1440, 1/23S1/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_6TC3_125 | 1/23S1/1450:1451, 1/23S1/1459:1461 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_6TC3_126 | 1/23S1/1468:1471, 1/23S1/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_6TC3_127 | 1/23S1/1474:1478, 1/23S1/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_6TC3_128 | 1/23S1/1481:1482, 1/23S1/1507:1510 | 180 degree turn | homologous IL_5J7L_301 NA | |
| IL_6TC3_129 | 1/23S1/1489:1491, 1/23S1/1499:1500 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_6TC3_130 | 1/23S1/1526:1529, 1/23S1/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_6TC3_131 | 1/23S1/1651:1656, 1/23S1/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_6TC3_132 | 1/23S1/1663:1665, 1/23S1/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
| IL_6TC3_133 | 1/23S1/1666:1669, 1/23S1/1993:1994 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 NA | |
| IL_6TC3_190 | 1/23S1/1666:1674, 1/23S1/1990:1994 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_6TC3_134 | 1/23S1/1669:1674, 1/23S1/1990:1993 | Intercalated tWH | homologous IL_5J7L_307 NA | |
| IL_6TC3_135 | 1/23S1/1686:1691, 1/23S1/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 NA | |
| IL_6TC3_136 | 1/23S1/1712:1718, 1/23S1/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 NA | |
| IL_6TC3_137 | 1/23S1/1720:1724, 1/23S1/1736:1740 | Triple sheared | homologous IL_5J7L_310 NA | |
| IL_6TC3_138 | 1/23S1/1727:1728, 1/23S1/1731:1733 | Single bulged C | geometric IL_5J7L_311 NA | |
| IL_6TC3_139 | 1/23S1/1770:1771, 1/23S1/1980:1982 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_6TC3_140 | 1/23S1/1798:1804, 1/23S1/1813:1821 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_6TC3_141 | 1/23S1/1837:1840, 1/23S1/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_6TC3_142 | 1/23S1/1841:1842, 1/23S1/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_6TC3_143 | 1/23S1/1846:1849, 1/23S1/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_6TC3_191 | 1/23S1/1851:1860, 1/23S1/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_6TC3_144 | 1/23S1/1864:1867, 1/23S1/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_6TC3_145 | 1/23S1/1933:1934, 1/23S1/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_6TC3_146 | 1/23S1/1934:1945, 1/23S1/1961:1964 | No text annotation | homologous IL_5J7L_319 NA | |
| IL_6TC3_147 | 1/23S1/2050:2052, 1/23S1/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_6TC3_148 | 1/23S1/2054:2056, 1/23S1/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_6TC3_192 | 1/23S1/2067:2069, 1/23S1/2442:2443 | Single bulged U | homologous IL_4WF9_080 IL_97561.1 | |
| IL_6TC3_151 | 1/23S1/2070:2071, 1/23S1/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6TC3_152 | 1/23S1/2081:2083, 1/23S1/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_6TC3_153 | 1/23S1/2085:2087, 1/23S1/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
| IL_6TC3_154 | 1/23S1/2103:2105, 1/23S1/2184:2186 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.1 | |
| IL_6TC3_155 | 1/23S1/2108:2110, 1/23S1/2179:2181 | Isolated non-canonical cWW pair | homologous IL_3U4M_001 IL_71625.1 | |
| IL_6TC3_199 | 1/23S1/2110:2120, 1/23S1/2178:2179 | No text annotation | homologous IL_3U4M_002 IL_32056.1 | |
| IL_6TC3_157 | 1/23S1/2123:2127, 1/23S1/2161:2175 | No text annotation | ||
| IL_6TC3_158 | 1/23S1/2129:2136, 1/23S1/2155:2159 | Kink-turn | homologous IL_5J7L_330 NA | |
| IL_6TC3_159 | 1/23S1/2202:2204, 1/23S1/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_6TC3_160 | 1/23S1/2297:2299, 1/23S1/2317:2321 | No text annotation | homologous IL_5J7L_332 NA | |
| IL_6TC3_161 | 1/23S1/2350:2353, 1/23S1/2364:2367 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_6TC3_162 | 1/23S1/2401:2403, 1/23S1/2414:2415 | Single bulged U | homologous IL_4WF9_088 IL_97561.1 | |
| IL_6TC3_195 | 1/23S1/2453:2454, 1/23S1/2498:2500 | Single stack bend | homologous IL_5J7L_391 NA | |
| IL_6TC3_196 | 1/23S1/2454:2455, 1/23S1/2496:2498 | Major groove platform | homologous IL_5J7L_392 NA | |
| IL_6TC3_197 | 1/23S1/2457:2459, 1/23S1/2493:2494 | Major groove platform | homologous IL_5J7L_393 NA | |
| IL_6TC3_165 | 1/23S1/2459:2461, 1/23S1/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 NA | |
| IL_6TC3_166 | 1/23S1/2466:2470, 1/23S1/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_6TC3_198 | 1/23S1/2507:2508, 1/23S1/2580:2582 | Major groove platform | homologous IL_5J7L_394 NA | |
| IL_6TC3_168 | 1/23S1/2510:2512, 1/23S1/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_6TC3_169 | 1/23S1/2512:2513, 1/23S1/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_6TC3_170 | 1/23S1/2522:2523, 1/23S1/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_6TC3_172 | 1/23S1/2591:2592, 1/23S1/2601:2603 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_6TC3_173 | 1/23S1/2636:2640, 1/23S1/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_6TC3_174 | 1/23S1/2652:2658, 1/23S1/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 NA | |
| IL_6TC3_175 | 1/23S1/2680:2684, 1/23S1/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_6TC3_176 | 1/23S1/2687:2691, 1/23S1/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_6TC3_177 | 1/23S1/2695:2696, 1/23S1/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_6TC3_178 | 1/23S1/2737:2742, 1/23S1/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_6TC3_179 | 1/23S1/2795:2796, 1/23S1/2799:2801 | Single bulged A | geometric IL_4WF9_022 IL_14190.1 | |
| IL_6TC3_180 | 1/23S1/2806:2811, 1/23S1/2889:2892 | No text annotation | homologous IL_5J7L_351 NA | |
| IL_6TC3_181 | 1/23S1/2838:2839, 1/23S1/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 NA | |
| IL_6TC3_182 | 1/23S1/2843:2846, 1/23S1/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_6TC3_183 | 1/23S1/2847:2852, 1/23S1/2865:2869 | tHS double platform | homologous IL_5J7L_354 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6TC3_184 | No text annotation | ||
| IL_6TC3_185 | Isolated cWH basepair | ||
| IL_6TC3_040 | No text annotation | ||
| IL_6TC3_052 | Isolated non-canonical cWW pair | ||
| IL_6TC3_066 | Partly complementary | ||
| IL_6TC3_149 | No text annotation | ||
| IL_6TC3_150 | Isolated non-canonical cWW pair | ||
| IL_6TC3_156 | Isolated non-canonical cWW pair | ||
| IL_6TC3_193 | Isolated non-canonical cWW pair | ||
| IL_6TC3_194 | Kink-turn | ||
| IL_6TC3_163 | No text annotation | ||
| IL_6TC3_164 | No text annotation | ||
| IL_6TC3_167 | No text annotation | ||
| IL_6TC3_171 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6TC3_001 | 1/05S1/10:16, 1/05S1/68:70, 1/05S1/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
| J3_6TC3_002 | 1/16S1/46:47, 1/16S1/361:367, 1/16S1/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_6TC3_027 | 1/16S1/46:52, 1/16S1/359:367, 1/16S1/393:395 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_6TC3_003 | 1/16S1/586:588, 1/16S1/651:654, 1/16S1/754:755 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_6TC3_028 | 1/16S1/586:588, 1/16S1/651:655, 1/16S1/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_6TC3_004 | 1/16S1/672:673, 1/16S1/717:725, 1/16S1/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_6TC3_005 | 1/16S1/826:829, 1/16S1/857:861, 1/16S1/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_6TC3_006 | 1/16S1/936:939, 1/16S1/1344:1350, 1/16S1/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_6TC3_007 | 1/16S1/943:946, 1/16S1/1235:1237, 1/16S1/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_6TC3_008 | 1/16S1/955:962, 1/16S1/973:984, 1/16S1/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_6TC3_009 | 1/16S1/990:993, 1/16S1/1045:1047, 1/16S1/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_6TC3_029 | 1/16S1/990:997, 1/16S1/1044:1047, 1/16S1/1210:1215 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_6TC3_039 | 1/16S1/1003:1008, 1/16S1/1021:1028, 1/16S1/1033:1037 | No text annotation | ||
| J3_6TC3_010 | 1/16S1/1063:1068, 1/16S1/1107:1113, 1/16S1/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_6TC3_031 | 1/16S1/1073:1074, 1/16S1/1083:1086, 1/16S1/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_6TC3_012 | 1/16S1/1116:1118, 1/16S1/1155:1158, 1/16S1/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_6TC3_032 | 1/16S1/1116:1118, 1/16S1/1155:1161, 1/16S1/1175:1184 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_6TC3_013 | 1/16S1/1237:1241, 1/16S1/1296:1303, 1/16S1/1334:1337 | No text annotation | homologous J3_5J7L_011 NA | |
| J3_6TC3_014 | 1/23S1/30:31, 1/23S1/474:481, 1/23S1/509:510 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_6TC3_033 | 1/23S1/30:31, 1/23S1/474:484, 1/23S1/496:510 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_6TC3_034 | 1/23S1/32:35, 1/23S1/445:461, 1/23S1/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_6TC3_015 | 1/23S1/56:57, 1/23S1/70:76, 1/23S1/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_6TC3_035 | 1/23S1/297:301, 1/23S1/316:325, 1/23S1/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_6TC3_016 | 1/23S1/683:689, 1/23S1/773:775, 1/23S1/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_6TC3_017 | 1/23S1/698:700, 1/23S1/732:736, 1/23S1/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6TC3_018 | 1/23S1/1055:1057, 1/23S1/1081:1087, 1/23S1/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_37832.1 | |
| J3_6TC3_019 | 1/23S1/1298:1303, 1/23S1/1625:1627, 1/23S1/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_6TC3_020 | 1/23S1/1306:1309, 1/23S1/1605:1611, 1/23S1/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_6TC3_021 | 1/23S1/1344:1349, 1/23S1/1382:1385, 1/23S1/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_6TC3_036 | 1/23S1/1424:1429, 1/23S1/1564:1565, 1/23S1/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_6TC3_022 | 1/23S1/2091:2093, 1/23S1/2196:2200, 1/23S1/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_6TC3_037 | 1/23S1/2282:2284, 1/23S1/2384:2395, 1/23S1/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_6TC3_023 | 1/23S1/2295:2297, 1/23S1/2321:2323, 1/23S1/2332:2337 | No text annotation | homologous J3_5J7L_045 NA | |
| J3_6TC3_038 | 1/23S1/2295:2299, 1/23S1/2317:2323, 1/23S1/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_6TC3_024 | 1/23S1/2517:2520, 1/23S1/2545:2547, 1/23S1/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_6TC3_025 | 1/23S1/2789:2791, 1/23S1/2805:2806, 1/23S1/2892:2894 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_6TC3_026 | 1/23S1/2812:2815, 1/23S1/2831:2836, 1/23S1/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J4_6TC3_001 | 1/16S1/115:122, 1/16S1/239:240, 1/16S1/286:289, 1/16S1/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_6TC3_002 | 1/16S1/142:144, 1/16S1/178:184, 1/16S1/193:198, 1/16S1/219:221 | No text annotation | homologous J4_5J7L_002 NA | |
| J4_6TC3_003 | 1/16S1/575:577, 1/16S1/764:769, 1/16S1/810:821, 1/16S1/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_6TC3_004 | 1/23S1/268:269, 1/23S1/370:375, 1/23S1/399:406, 1/23S1/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_6TC3_005 | 1/23S1/297:301, 1/23S1/316:319, 1/23S1/323:325, 1/23S1/337:341 | No text annotation | homologous J4_5J7L_019 NA | |
| J4_6TC3_006 | 1/23S1/601:604, 1/23S1/624:628, 1/23S1/635:638, 1/23S1/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_6TC3_007 | 1/23S1/1270:1276, 1/23S1/1294:1295, 1/23S1/1645:1648, 1/23S1/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_6TC3_008 | 1/23S1/1310:1314, 1/23S1/1338:1343, 1/23S1/1404:1405, 1/23S1/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_6TC3_009 | 1/23S1/1313:1314, 1/23S1/1338:1343, 1/23S1/1404:1405, 1/23S1/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_6TC3_010 | 1/23S1/1444:1445, 1/23S1/1466:1467, 1/23S1/1525:1526, 1/23S1/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_6TC3_011 | 1/23S1/1772:1776, 1/23S1/1788:1792, 1/23S1/1827:1830, 1/23S1/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_6TC3_012 | 1/23S1/1833:1835, 1/23S1/1905:1906, 1/23S1/1924:1933, 1/23S1/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_6TC3_013 | 1/23S1/2285:2289, 1/23S1/2343:2347, 1/23S1/2370:2372, 1/23S1/2381:2383 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_6TC3_014 | 1/23S1/2643:2646, 1/23S1/2674:2676, 1/23S1/2731:2735, 1/23S1/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J4_6TC3_015 | 1/PTR1/7:10, 1/PTR1/25:27, 1/PTR1/43:49, 1/PTR1/65:66 | tRNA junction | homologous J4_5E81_027 NA | |
| J5_6TC3_001 | 1/16S1/36:39, 1/16S1/403:406, 1/16S1/436:440, 1/16S1/497:500, 1/16S1/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_6TC3_002 | 1/16S1/36:39, 1/16S1/403:406, 1/16S1/436:442, 1/16S1/492:500, 1/16S1/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_6TC3_003 | 1/16S1/58:61, 1/16S1/106:113, 1/16S1/314:316, 1/16S1/337:339, 1/16S1/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J5_6TC3_004 | 1/23S1/47:54, 1/23S1/116:121, 1/23S1/130:131, 1/23S1/148:150, 1/23S1/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_6TC3_005 | 1/23S1/531:533, 1/23S1/560:564, 1/23S1/577:579, 1/23S1/1261:1262, 1/23S1/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_6TC3_006 | 1/23S1/584:589, 1/23S1/668:671, 1/23S1/809:812, 1/23S1/1195:1196, 1/23S1/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_6TC3_007 | 1/23S1/1674:1682, 1/23S1/1706:1707, 1/23S1/1751:1752, 1/23S1/1756:1764, 1/23S1/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_6TC3_008 | 1/23S1/2057:2064, 1/23S1/2446:2453, 1/23S1/2500:2506, 1/23S1/2583:2588, 1/23S1/2606:2611 | No text annotation | ||
| J5_6TC3_009 | 1/23S1/2074:2077, 1/23S1/2243:2246, 1/23S1/2258:2259, 1/23S1/2281:2282, 1/23S1/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J6_6TC3_001 | 1/23S1/45:46, 1/23S1/179:183, 1/23S1/214:224, 1/23S1/231:235, 1/23S1/262:266, 1/23S1/426:433 | No text annotation | ||
| J6_6TC3_002 | 1/23S1/2074:2077, 1/23S1/2243:2246, 1/23S1/2258:2259, 1/23S1/2281:2284, 1/23S1/2384:2395, 1/23S1/2421:2435 | No text annotation | ||
| J7_6TC3_001 | 1/23S1/8:15, 1/23S1/525:531, 1/23S1/2018:2023, 1/23S1/2040:2043, 1/23S1/2625:2630, 1/23S1/2788:2789, 1/23S1/2894:2895 | No text annotation | ||
| J7_6TC3_002 | 1/23S1/817:822, 1/23S1/835:838, 1/23S1/940:946, 1/23S1/971:976, 1/23S1/987:991, 1/23S1/1163:1164, 1/23S1/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6TC3_030 | No text annotation | ||
| J3_6TC3_011 | No text annotation |
Coloring options: