HL_6TC3_026

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_026 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.0514

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6TC3|1|16S1|U|1076
6TC3|1|16S1|G|1077
6TC3|1|16S1|U|1078
6TC3|1|16S1|G|1079
6TC3|1|16S1|A|1080
6TC3|1|16S1|A|1081

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S021

30S ribosomal protein S2

Chain S051

30S ribosomal protein S5