HL_6TC3_034

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(2MG)G(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

6TC3|1|16S1|G|1517

QA status

Modified nucleotides: 2MG, MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_034 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.0918

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6TC3|1|16S1|G|1515
6TC3|1|16S1|2MG|1516
6TC3|1|16S1|G|1517
6TC3|1|16S1|MA6|1518
6TC3|1|16S1|MA6|1519
6TC3|1|16S1|C|1520

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain 23S1

Large subunit ribosomal RNA; LSU rRNA