HL_6TC3_038

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

6TC3|1|23S1|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_038 not in the Motif Atlas

Geometric match to HL_6QN3_001

Geometric discrepancy: 0.0854

The information below is about HL_6QN3_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6TC3|1|23S1|U|137
6TC3|1|23S1|U|138
6TC3|1|23S1|U|139
6TC3|1|23S1|C|140
6TC3|1|23S1|G|141
6TC3|1|23S1|A|142

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L231

50S ribosomal protein L23