HL_6TC3_042

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_042 not in the Motif Atlas

Homologous match to HL_7RQB_008

Geometric discrepancy: 0.0696

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

6TC3|1|23S1|C|246
6TC3|1|23S1|G|247
6TC3|1|23S1|G|248
6TC3|1|23S1|C|249
6TC3|1|23S1|G|250
6TC3|1|23S1|A|251
6TC3|1|23S1|G|252

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L151

50S ribosomal protein L15

Chain L351

50S ribosomal protein L35