HL_6TC3_047

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6TC3|1|23S1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_047 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0589

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6TC3|1|23S1|G|410
6TC3|1|23S1|G|411
6TC3|1|23S1|A|412
6TC3|1|23S1|C|413
6TC3|1|23S1|C|414
6TC3|1|23S1|A|415
6TC3|1|23S1|U|416
6TC3|1|23S1|C|417

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L151

50S ribosomal protein L15