HL_6TC3_052

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

6TC3|1|23S1|A|613, 6TC3|1|23S1|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_052 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.0892

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

6TC3|1|23S1|C|611
6TC3|1|23S1|G|612
6TC3|1|23S1|A|613
6TC3|1|23S1|A|614
6TC3|1|23S1|U|615
6TC3|1|23S1|A|616
6TC3|1|23S1|G|617

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L041

50S ribosomal protein L4