HL_6TC3_055

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_055 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.094

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6TC3|1|23S1|G|712
6TC3|1|23S1|G|713
6TC3|1|23S1|U|714
6TC3|1|23S1|A|715
6TC3|1|23S1|A|716
6TC3|1|23S1|C|717
6TC3|1|23S1|A|718
6TC3|1|23S1|C|719

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain 16S1

Small subunit ribosomal RNA; SSU rRNA

Chain S151

30S ribosomal protein S15