HL_6TC3_057

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

6TC3|1|23S1|A|781, 6TC3|1|23S1|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_057 not in the Motif Atlas

Homologous match to HL_7RQB_024

Geometric discrepancy: 0.0598

The information below is about HL_7RQB_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74322.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

4

Unit IDs

6TC3|1|23S1|U|779
6TC3|1|23S1|G|780
6TC3|1|23S1|A|781
6TC3|1|23S1|A|782
6TC3|1|23S1|A|783
6TC3|1|23S1|G|784
6TC3|1|23S1|G|785

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L021

50S ribosomal protein L2