HL_6TC3_074

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

6TC3|1|23S1|A|1614, 6TC3|1|23S1|A|1616

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_074 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0546

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6TC3|1|23S1|C|1612
6TC3|1|23S1|G|1613
6TC3|1|23S1|A|1614
6TC3|1|23S1|C|1615
6TC3|1|23S1|A|1616
6TC3|1|23S1|C|1617
6TC3|1|23S1|6MZ|1618
6TC3|1|23S1|G|1619

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L221

50S ribosomal protein L22

Chain L341

50S ribosomal protein L34

Chain SPE1

SpeFL