HL_6TC3_087

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6TC3|1|23S1|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_087 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.073

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TC3|1|23S1|C|2248
6TC3|1|23S1|U|2249
6TC3|1|23S1|G|2250
6TC3|1|23S1|OMG|2251
6TC3|1|23S1|G|2252
6TC3|1|23S1|G|2253
6TC3|1|23S1|C|2254
6TC3|1|23S1|G|2255
6TC3|1|23S1|G|2256

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L161

50S ribosomal protein L16

Chain L271

50S ribosomal protein L27

Chain PTR1

Transfer RNA; tRNA