HL_6TC3_104

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGCUGGAUAG

Length

11 nucleotides

Bulged bases

6TC3|1|PTR1|C|16, 6TC3|1|PTR1|U|17, 6TC3|1|PTR1|G|17|||A, 6TC3|1|PTR1|G|18, 6TC3|1|PTR1|A|19, 6TC3|1|PTR1|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_104 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.114

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6TC3|1|PTR1|C|13
6TC3|1|PTR1|A|14
6TC3|1|PTR1|G|15
6TC3|1|PTR1|C|16
6TC3|1|PTR1|U|17
6TC3|1|PTR1|G|17|||A
6TC3|1|PTR1|G|18
6TC3|1|PTR1|A|19
6TC3|1|PTR1|U|20
6TC3|1|PTR1|A|21
6TC3|1|PTR1|G|22

Current chains

Chain PTR1

P-site Arg-tRNA

Nearby chains

Chain 23S1

Large subunit ribosomal RNA; LSU rRNA

Chain L051

50S ribosomal protein L5