HL_6TC3_106
3D structure
- PDB id
- 6TC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- G(5MU)(PSU)CGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TC3_106 not in the Motif Atlas
- Homologous match to HL_6CFJ_108
- Geometric discrepancy: 0.143
- The information below is about HL_6CFJ_108
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
6TC3|1|PTR1|G|53
6TC3|1|PTR1|5MU|54
6TC3|1|PTR1|PSU|55
6TC3|1|PTR1|C|56
6TC3|1|PTR1|G|57
6TC3|1|PTR1|A|58
6TC3|1|PTR1|A|59
6TC3|1|PTR1|U|60
6TC3|1|PTR1|C|61
Current chains
- Chain PTR1
- P-site Arg-tRNA
Nearby chains
- Chain 23S1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L051
- 50S ribosomal protein L5
- Chain L161
- 50S ribosomal protein L16
Coloring options: