HL_6TC3_107
3D structure
- PDB id
- 6TC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 6TC3|1|05S1|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TC3_107 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.1021
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6TC3|1|05S1|A|34
6TC3|1|05S1|C|35
6TC3|1|05S1|C|36
6TC3|1|05S1|C|37
6TC3|1|05S1|C|38
6TC3|1|05S1|A|39
6TC3|1|05S1|U|40
6TC3|1|05S1|G|41
6TC3|1|05S1|C|42
6TC3|1|05S1|C|43
6TC3|1|05S1|G|44
6TC3|1|05S1|A|45
6TC3|1|05S1|A|46
6TC3|1|05S1|C|47
6TC3|1|05S1|U|48
Current chains
- Chain 05S1
- 5S rRNA
Nearby chains
- Chain 23S1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L051
- 50S ribosomal protein L5
- Chain L181
- 50S ribosomal protein L18
- Chain L311
- 50S ribosomal protein L31
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