HL_6TH6_040

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

6TH6|1|BA|C|350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_040 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.1017

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

6TH6|1|BA|C|344
6TH6|1|BA|U|345
6TH6|1|BA|G|346
6TH6|1|BA|G|347
6TH6|1|BA|A|348
6TH6|1|BA|A|349
6TH6|1|BA|C|350
6TH6|1|BA|G|351

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L24

Chain Bd

50S ribosomal protein L32e