HL_6TH6_042

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6TH6|1|BA|G|368, 6TH6|1|BA|A|369, 6TH6|1|BA|A|370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_042 not in the Motif Atlas

Homologous match to HL_4V9F_012

Geometric discrepancy: 0.1228

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

6TH6|1|BA|G|366
6TH6|1|BA|U|367
6TH6|1|BA|G|368
6TH6|1|BA|A|369
6TH6|1|BA|A|370
6TH6|1|BA|A|371
6TH6|1|BA|G|372
6TH6|1|BA|C|373
6TH6|1|BA|C|374

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BX

50S ribosomal protein L24

Chain Bd

50S ribosomal protein L32e