HL_6TH6_043

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GUCGGAUAUC

Length

10 nucleotides

Bulged bases

6TH6|1|BA|U|429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_043 not in the Motif Atlas

Homologous match to HL_4V9F_013

Geometric discrepancy: 0.1001

The information below is about HL_4V9F_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91228.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6TH6|1|BA|G|423
6TH6|1|BA|U|424
6TH6|1|BA|C|425
6TH6|1|BA|G|426
6TH6|1|BA|G|427
6TH6|1|BA|A|428
6TH6|1|BA|U|429
6TH6|1|BA|A|430
6TH6|1|BA|U|431
6TH6|1|BA|C|432

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BP

50S ribosomal protein L15e

Chain Bl

50S ribosomal protein L44e