HL_6TH6_049

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGUCAAC

Length

7 nucleotides

Bulged bases

6TH6|1|BA|U|706, 6TH6|1|BA|A|708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_049 not in the Motif Atlas

Homologous match to HL_4V9F_019

Geometric discrepancy: 0.2672

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

6TH6|1|BA|G|704
6TH6|1|BA|G|705
6TH6|1|BA|U|706
6TH6|1|BA|C|707
6TH6|1|BA|A|708
6TH6|1|BA|A|709
6TH6|1|BA|C|710

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BX

50S ribosomal protein L24